miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|39827161|gb|CK270183.1|CK270183 CATGGGTTGATGACACCGTTGGACTTATCCTTCACTCTGCTCTGTTGGTGCCGTACTTCTCTTGGAAATATAGTCATCGT
CGCCACCACTCCAACACTGGCTCCCTCGAGCGTGATGAGGTCTTTGTGCCCAAGCCAAAATCTCAGCTCGGATGGTATTC
CAAGTACTTGAACAATCCACCAGGCAGGGTCCTCTCACTTACAATCACCCTCACTCTTGGCTGGCCGTTGTACTTGGCCT
TCAATGTATCTGGCAGACCATACGACCGATTTGCATGTCACTATGACCCTTACGGCCCAATCTACAACAACCGTGAGAGG
CTACAGATCTTCGTTTCTGATGCTGGAGTTCTCGGAGTTTGTTATCTGCTATACCGTATTGCCTTAGTGAAAGGTCTAGC
TTGGCTAGTGTGCATCTACGGTGTACCCCTCCTCGTCGTGAACGGCTTCCTTGTCTTGATCACCTACTTGCAGCACACTC
ACCCATCATTGCCACACTACGATTCAACCGAGTGGGATTGGCTTAGGGGAGCTTTGGCAACCTGTGACAGAGACTATGGG
GTTCTAAACAAGGTCTTCCACAACATCACCGACACTCACGTGGTGCACCATCTGTTCTCAACCATGCCACACTACAACGC
GATGGAGGCAACCAAAGCAGTCAAGCCACTACTCGGAGACTACTACCAATTCGATGGAACCCCGATTTTCAAGGCAATGT
GGAGGGAAGCTAAAGAGTGTCTCTACGTCGAGAAAGACGAATCATCTCAAGGCAAAGGTGTCTTCTGGTACAAAAACAAG
CTCTGAAATACTAGAACAGAAACTCAGCTTGCTTTGAATTGGTCCTTTGGTAATGTTTGGTCAGTGTCTTGAGTAAGTAT
TTTGGATTTAAGTTAATTTAGCTAATGTGTTGTCTTTGTTAGTAAGGGGAGGGTTATGTTTGATGAAATTTTGATAATAA
AGG




Most similar to sp|P48631|FD6E2_SOYBN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P48631|FD6E2_SOYBN Omega-6 fatty acid desaturase, endoplasmic
           reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
          Length = 383

 Score =  491 bits (1264), Expect = e-138
 Identities = 220/266 (82%), Positives = 247/266 (92%)
 Frame = +3

Query: 6   VDDTVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKPKSQLGWYSKYLNNPPG 185
           +DD VGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPK KS + WYSKYLNNPPG
Sbjct: 118 LDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPG 177

Query: 186 RVLSLTITLTLGWPLYLAFNVSGRPYDRFACHYDPYGPIYNNRERLQIFVSDAGVLGVCY 365
           RVL+L +TLTLGWPLYLA NVSGRPYDRFACHYDPYGPIY++RERLQI++SDAGVL V Y
Sbjct: 178 RVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVY 237

Query: 366 LLYRIALVKGLAWLVCIYGVPLLVVNGFLVLITYLQHTHPSLPHYDSTEWDWLRGALATC 545
            L+R+A+ KGLAW+VC+YGVPLLVVNGFLVLIT+LQHTHP+LPHY S+EWDWLRGALAT 
Sbjct: 238 GLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATV 297

Query: 546 DRDYGVLNKVFHNITDTHVVHHLFSTMPHYNAMEATKAVKPLLGDYYQFDGTPIFKAMWR 725
           DRDYG+LNKVFHNITDTHV HHLFSTMPHY+AMEATKA+KP+LG+YY+FD TP  KAMWR
Sbjct: 298 DRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWR 357

Query: 726 EAKECLYVEKDESSQGKGVFWYKNKL 803
           EA+EC+YVE D+S++ KGVFWY NKL
Sbjct: 358 EARECIYVEPDQSTESKGVFWYNNKL 383